bio-alignment-sorting
bio-alignment-sorting is a Bioinformatics & life sciences skill for AI agents, published by GPTomics in the bioSkills repository on GitHub. Skillspace rates bio-alignment-sorting F (45/100) and the safety scan rated it risky; the rating is based on static analysis only.
Risky. This skill has patterns associated with unsafe behaviour. Read the source carefully before running it.
Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.
- Grade
- F
- Quality
- 45 / 100
- Safety
- Risky
- GitHub stars
- 1,202
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since.
Our review
- Architecture
- 96 / 100
- Maturity
- Basic: a single SKILL.md
- Security scan
- High-risk patterns
- License
- Not declared. Check the repository before reusing it.
What the scanner flagged
- executes shell/subprocess
Not checked yet
- Category is a classifier prediction; no model has read this skill yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
Skillspace indexes and rates this skill; it does not host or endorse it. Run third-party skills at your own risk.