bioinformatics-installer
bioinformatics-installer is a Bioinformatics & life sciences skill for AI agents, published by ammawla in the encode-toolkit repository on GitHub. Skillspace rates bioinformatics-installer F (15/100) and the safety scan rated it unsafe; the rating is based on static analysis only.
Unsafe. This skill has patterns associated with malicious or dangerous behaviour. We do not recommend running it.
Install bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker), Python packages (Scanpy, deeptools), and Nextflow pipeline infrastructure. Generates conda environments, R install scripts, and Python requirements. Use when the user needs to set up a bioinformatics workstation, install tools for a specific assay, create reproducible environments, or troubleshoot dependency issues. Trigger on: install tools, set up environment, conda create, bioinformatics setup, install R packages, install Bioconductor, install pipeline tools.
- Grade
- F
- Quality
- 15 / 100
- Safety
- Unsafe
- GitHub stars
- 37
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since.
Our review
- Architecture
- 88 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- Critical-risk patterns
- License
- AGPL-3.0
- Adoption
- Adopted by 0 other repositories, in 1 collections
What the scanner flagged
- pipe remote script to shell
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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