bmfm-targets-run

bmfm-targets-run is a Model training & evaluation skill for AI agents, published by BiomedSciAI in the biomed-multi-omic repository on GitHub. Skillspace rates bmfm-targets-run C (77/100) and it passed the safety scan; the rating is based on static analysis only.

Generate, modify, debug, and run YAML configs and `bmfm-targets-run` CLI commands for the biomed-multi-omic (BMFM) package — scRNA (bmfm-rna) and DNA (bmfm-dna) foundation models. Use this skill whenever the user is working in the BiomedSciAI/biomed-multi-omic repo, mentions `bmfm-targets-run`, wants to run prediction / fine-tuning / pretraining / interpretation with BMFM checkpoints (e.g. `ibm-research/biomed.rna.bert.*`, `ibm-research/biomed.rna.llama.*`, `ibm-research/biomed.dna.modernbert.*`), asks about Hydra configs under `run/`, needs to translate a published checkpoint config into a fine-tuning config, picks a loss for a new downstream task, or is debugging a failing Hydra/yaml config in this codebase. Trigger even if the user doesn't say "yaml" or "config" — e.g. "I have an h5ad and I want embeddings" or "help me finetune on celltype" are core use cases for this skill.

Grade
C
Quality
77 / 100
Safety
Passed
GitHub stars
62

Unproven: rated by static analysis only, not yet compared head-to-head.

This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.

View source on GitHubBiomedSciAI/biomed-multi-omic

Our review

Architecture
100 / 100
Maturity
Structured: ships references or scripts
Security scan
Low-risk patterns
License
Apache-2.0
Adoption
Adopted by 0 other repositories, in 0 collections

What the scanner flagged

  • mentions secrets in text

Not checked yet

  • Not judged on the rubric yet (not a contender in its category)
  • No blind task eval yet
  • Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
  • Sibling files (scripts, references) not fetched; security scan covers SKILL.md only

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