complexa-design

complexa-design is a Bioinformatics & life sciences skill for AI agents, published by NVIDIA-BioNeMo in the Proteina-Complexa repository on GitHub. Skillspace rates complexa-design F (45/100) and the safety scan rated it risky; the rating is based on static analysis only.

End-to-end Proteina-Complexa design pipeline driver. Reach for this skill whenever the user wants to "design a binder", "design binders for X", "run complexa design", "de novo binder", "PDL1 binder", "TrkA binder", "design proteins for target", "protein binder design", "ligand binder", "design a small-molecule binder", "ATP-binding protein", "AME motif scaffolding", "scaffold a motif near a ligand", "motif + ligand design", "enzyme scaffolding", "flow matching protein design", "beam-search binder", "FK steering", "MCTS protein design", "refold with AF2", "refold with RF3", or wants success rates, interface pAE, scRMSD, or FoldSeek diversity from a single command. This is the scientific anchor of the skill set: it drives `complexa design <pipeline>` from target picking to manifest emission and tells the user how many designs passed.

Grade
F
Quality
45 / 100
Safety
Risky
GitHub stars
393

Unproven: rated by static analysis only, not yet compared head-to-head.

This rating describes the version of the repository we crawled; it may have changed since.

View source on GitHubNVIDIA-BioNeMo/Proteina-Complexa

Our review

Architecture
78 / 100
Maturity
Structured: ships references or scripts
Security scan
High-risk patterns
License
Not declared. Check the repository before reusing it.
Adoption
Adopted by 0 other repositories, in 0 collections

What the scanner flagged

  • dynamic code execution (eval/exec)

Not checked yet

  • Not judged on the rubric yet (not a contender in its category)
  • No blind task eval yet
  • Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
  • Sibling files (scripts, references) not fetched; security scan covers SKILL.md only

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