data-provenance

data-provenance is a Scientific data analysis & plotting skill for AI agents, published by ammawla in the encode-toolkit repository on GitHub. Skillspace rates data-provenance D (60/100) and it passed the safety scan; the rating is based on static analysis only.

Track exact provenance for every operation on ENCODE data — tool versions, reference files, scripts, parameters, and timestamps — to enable publication-ready methods writing. Use when the user processes ENCODE files, runs any bioinformatics tool, creates filtered/merged datasets, runs pipelines, performs liftover, uses R/Python/Bash for analysis, or needs to document their analysis chain for reproducibility and publication. Also use when the user says "write me methods" to auto-generate methods sections from the provenance log. This skill implements comprehensive provenance documentation: every tool, every version, every reference file, every parameter, every accession — no shortcuts. Use this skill for ANY processing step, ANY file transformation, ANY analysis operation on ENCODE data.

Grade

D

Quality

60 / 100

Safety

Passed

GitHub stars

24

Unproven: rated by static analysis only, not yet compared head-to-head.

Our two independent classifiers differ on this skill's category, so treat the placement as provisional.

This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.

Skillspace indexes and rates this skill; it does not host or endorse it. Run third-party skills at your own risk.