deeptools
deeptools is a Bioinformatics & life sciences skill for AI agents, published by K-Dense-AI in the scientific-agent-skills repository on GitHub. Skillspace rates deeptools C (77/100) and it passed the safety scan; a judge model has also reviewed it.
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
- Grade
- C
- Quality
- 77 / 100
- Safety
- Passed
- GitHub stars
- 44,723
Placed #3 of 6 in the judged category final for Bioinformatics & life sciences.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 93 / 100
- Maturity
- Packaged: licensed, with a version or references
- Security scan
- No issues found
- License
- Not declared. Check the repository before reusing it.
Judge review
Placed #3 of 6 in the judged category final for Bioinformatics & life sciences.
- Trigger
85 85 - Instructions
86 86 - Specificity
90 90 - Safety
94 94 - Disclosure
90 90 - Maintenance
82 82
A validate-then-generate workflow (validate_files.py, workflow_generator.py) backed by a genome-size table and a clear normalization-selection guide, pinned to 3.5.6 with platform-specific install notes.
Not checked yet
- Category is a classifier prediction; no model has read this skill yet
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
Also published in 1 other repo
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