defining-cohort-phenotypes

defining-cohort-phenotypes is a Bioinformatics & life sciences skill for AI agents, published by maziyarpanahi in the openmed repository on GitHub. Skillspace rates defining-cohort-phenotypes C (74/100) and it passed the safety scan; the rating is based on static analysis only.

Authors computable phenotype and cohort definitions in the OHDSI ATLAS / CIRCE style over the OMOP CDM, combining standard concept sets with NLP-derived features that OpenMed extracts. Use when the user wants to define a patient cohort, write a computable phenotype, reuse PheKB or OHDSI Phenotype Library logic, build concept sets, or augment code-based criteria with text features. Trigger keywords: phenotype, cohort definition, OHDSI, ATLAS, CIRCE, OMOP CDM, concept set, PheKB, Phenotype Library, eMERGE, computable phenotype. Pairs adjacent to OpenMed: NLP features from openmed.analyze_text augment code-based phenotypes for entities that are poorly captured by structured codes. OMOP CDM and OHDSI tools are open source; restricted vocabularies (SNOMED, CPT) are user-supplied.

Grade

C

Quality

74 / 100

Safety

Passed

GitHub stars

5,313

Unproven: rated by static analysis only, not yet compared head-to-head.

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