dynamo-geneid-convert
dynamo-geneid-convert is a Bioinformatics & life sciences skill for AI agents, published by aristoteleo in the dynamo-release repository on GitHub. Skillspace rates dynamo-geneid-convert C (74/100) and it passed the safety scan; the rating is based on static analysis only.
Convert Ensembl-style gene IDs to gene symbols in `dynamo` with `dynamo.preprocessing.convert2gene_symbol` or `dynamo.preprocessing.convert2symbol`, including human and zebrafish IDs, version-suffix stripping, `AnnData.var_names` updates, and optional preprocessing handoff. Use when adapting `docs/tutorials/notebooks/110_geneid_convert_tutorial.ipynb`, standardizing `adata.var_names`, mapping Ensembl IDs to symbols, or doing identifier cleanup before a `Preprocessor` recipe.
- Grade
- C
- Quality
- 74 / 100
- Safety
- Passed
- GitHub stars
- 504
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 100 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- BSD-3-Clause
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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