dynamo-one-shot-total-rna-velocity
dynamo-one-shot-total-rna-velocity is a Bioinformatics & life sciences skill for AI agents, published by aristoteleo in the dynamo-release repository on GitHub. Skillspace rates dynamo-one-shot-total-rna-velocity C (74/100) and it passed the safety scan; the rating is based on static analysis only.
Run or adapt a one-shot total RNA velocity workflow in `dynamo` for metabolic-labeling or scNT-seq `AnnData`, including monocle preprocessing with an optional curated gene list, grouped moments by labeling time, Model-2 `dynamics`, `calculate_velocity_alpha_minus_gamma_s`, low-dimensional projection with `cell_velocities`, and optional streamline or phase-portrait plotting. Use when converting tutorials such as `301_tutorial_hsc_velocity.ipynb`, or when choosing between `one_shot_method` branches like `sci_fate` and `combined` and projection `method` branches like `cosine` and `pearson`.
- Grade
- C
- Quality
- 74 / 100
- Safety
- Passed
- GitHub stars
- 504
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 100 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- BSD-3-Clause
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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