dynamo-pseudotime-velocity
dynamo-pseudotime-velocity is a Bioinformatics & life sciences skill for AI agents, published by aristoteleo in the dynamo-release repository on GitHub. Skillspace rates dynamo-pseudotime-velocity C (71/100) and it passed the safety scan; the rating is based on static analysis only.
Convert pseudotime into reusable `dynamo` RNA velocity outputs on an `AnnData` object, then optionally continue into vector field, topology / potential, fate, and animation without relying on measured spliced/unspliced kinetics. Use when adapting the `201_dynamo_beyondvelo.ipynb` tutorial, working from pseudotime plus a neighbor graph and embedding, or choosing between `pseudotime_velocity` method branches such as `hodge`, `gradient`, and `naive`.
- Grade
- C
- Quality
- 71 / 100
- Safety
- Passed
- GitHub stars
- 504
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 94 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- BSD-3-Clause
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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