etetoolkit
etetoolkit is a Bioinformatics & life sciences skill for AI agents, published by K-Dense-AI in the scientific-agent-skills repository on GitHub. Skillspace rates etetoolkit C (77/100) and it passed the safety scan; a judge model has also reviewed it.
Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4. Use for Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree evolutionary events and reconciliation, NCBI/GTDB taxonomy, SmartView exploration, and publication rendering. Do not use it to infer trees from raw sequences; align sequences and infer a tree first.
- Grade
- C
- Quality
- 77 / 100
- Safety
- Passed
- GitHub stars
- 44,723
Placed #2 of 6 in the judged category final for Bioinformatics & life sciences.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 94 / 100
- Maturity
- Packaged: licensed, with a version or references
- Security scan
- No issues found
- License
- Not declared. Check the repository before reusing it.
Judge review
Placed #2 of 6 in the judged category final for Bioinformatics & life sciences.
- Trigger
93 93 - Instructions
90 90 - Specificity
94 94 - Safety
95 95 - Disclosure
87 87 - Maintenance
89 89
Pins ETE 4.4.0 with a dated currency check, an explicit ETE3-vs-4 migration list, and a clear scope boundary against tree inference, though its core file runs long before deferring to references.
Not checked yet
- Category is a classifier prediction; no model has read this skill yet
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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