freesurfer-tool

freesurfer-tool is a Bioinformatics & life sciences skill for AI agents, published by CUHK-AIM-Group in the NeuroClaw repository on GitHub. Skillspace rates freesurfer-tool F (45/100) and the safety scan rated it risky; the rating is based on static analysis only.

Use this skill whenever the user wants to process structural MRI data (T1w, T2w, FLAIR, etc.) with FreeSurfer, especially for cortical/subcortical segmentation, surface reconstruction, parcellation, cortical thickness, volume statistics, or full recon-all pipeline. Triggers include: 'freesurfer', 'recon-all', 'segment MRI', 'FreeSurfer processing', 'cortical segmentation', 'subcortical segmentation', 'run recon-all', 'freesurfer T1', 'process brain MRI with freesurfer', 'aseg aparc', or any request to run FreeSurfer on NIfTI MRI data for research analysis.

Grade
F
Quality
45 / 100
Safety
Risky
GitHub stars
74

Unproven: rated by static analysis only, not yet compared head-to-head.

This rating describes the version of the repository we crawled; it may have changed since.

Our review

Architecture
94 / 100
Maturity
Structured: ships references or scripts
Security scan
High-risk patterns
License
MIT
Adoption
Adopted by 0 other repositories, in 2 collections

What the scanner flagged

  • executes shell/subprocess

Not checked yet

  • Not judged on the rubric yet (not a contender in its category)
  • No blind task eval yet
  • Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
  • Sibling files (scripts, references) not fetched; security scan covers SKILL.md only

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