gtdb-phylo-diagram
gtdb-phylo-diagram is a Bioinformatics & life sciences skill for AI agents, published by Knowledge-Graph-Hub in the kg-microbe repository on GitHub. Skillspace rates gtdb-phylo-diagram C (74/100) and it passed the safety scan; the rating is based on static analysis only.
Render a GTDB phylogenetic diagram from a KG-Microbe merged release with each clade sized by the count of non-taxonomy edges (phenotypes, growth media, chemicals, etc.) incident on it. Folds NCBITaxon and kgmicrobe.strain edges onto their GTDB equivalent via in-graph close_match, GTDB metadata, and the published NCBI2GTDB tables. Persists the resolved mapping and a gap report. Use when you need to see *where in the GTDB tree the metadata is concentrated* — which clades are well-characterized vs sparse.
- Grade
- C
- Quality
- 74 / 100
- Safety
- Passed
- GitHub stars
- 25
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 100 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- BSD-3-Clause
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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