lobster-use

lobster-use is a Bioinformatics & life sciences skill for AI agents, published by the-omics-os in the lobster repository on GitHub. Skillspace rates lobster-use F (45/100) and the safety scan rated it risky; the rating is based on static analysis only.

Runs bioinformatics analysis with Lobster AI -- single-cell RNA-seq, bulk RNA-seq, genomics (VCF/GWAS), proteomics (mass spec/affinity), metabolomics (LC-MS/GC-MS/NMR), machine learning (feature selection, survival analysis), drug discovery, literature search, dataset discovery, and visualization. Use when working with biological data, omics analysis, or bioinformatics tasks. Covers: H5AD, CSV, VCF, PLINK, 10X, mzML formats, GEO/SRA/PRIDE/MetaboLights accessions. Lobster AI works in two deployment modes: - LOCAL: agents run on-device, you provide an LLM API key - CLOUD: agents run on Omics-OS Cloud (ECS Fargate), managed Bedrock, per-user billing TRIGGER PHRASES: "analyze cells", "search PubMed", "download GEO", "run QC", "cluster", "find markers", "differential expression", "UMAP", "volcano plot", "single-cell", "RNA-seq", "VCF", "GWAS", "proteomics", "mass spec", "metabolomics", "MetaboLights", "LC-MS", "metabolite", "feature selection", "survival analysis", "biomarker",…

Grade
F
Quality
45 / 100
Safety
Risky
GitHub stars
42

Unproven: rated by static analysis only, not yet compared head-to-head.

Our two independent classifiers differ on this skill's category, so treat the placement as provisional.

This rating describes the version of the repository we crawled; it may have changed since.

View source on GitHubthe-omics-os/lobster

Our review

Architecture
79 / 100
Maturity
Structured: ships references or scripts
Security scan
High-risk patterns
License
Not declared. Check the repository before reusing it.
Adoption
Adopted by 0 other repositories, in 0 collections

What the scanner flagged

  • references sensitive credential env
  • mentions secrets in text

Not checked yet

  • Not judged on the rubric yet (not a contender in its category)
  • No blind task eval yet
  • Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
  • Sibling files (scripts, references) not fetched; security scan covers SKILL.md only

Better-rated skills in Bioinformatics & life sciences

Skillspace indexes and rates this skill; it does not host or endorse it. Run third-party skills at your own risk.