msa-structure-prediction-pipeline

msa-structure-prediction-pipeline is a Bioinformatics & life sciences skill for AI agents, published by NVIDIA-BioNeMo in the bionemo-agent-toolkit repository on GitHub. Skillspace rates msa-structure-prediction-pipeline D (66/100) and it passed the safety scan; the rating is based on static analysis only.

Run a complete protein structure prediction pipeline using NVIDIA BioNeMo NIMs: search for MSA alignments with MSA-Search (ColabFold), then predict the structure with OpenFold3 using the retrieved alignments. Use this skill whenever the user wants to predict a protein structure with maximum accuracy using MSA context, run the full AlphaFold3-style pipeline, generate MSA-informed structure predictions, or improve structure prediction accuracy by providing evolutionary information. Triggers on: MSA structure prediction pipeline, structure prediction pipeline, MSA-informed prediction, OpenFold3, ColabFold MSA, AlphaFold3 pipeline, protein structure, homology search, a3m alignment, UniRef30, NIM microservice. This pipeline chains MSA-Search and OpenFold3.

Grade

D

Quality

66 / 100

Safety

Passed

GitHub stars

371

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