rnaseq-differential-expression
rnaseq-differential-expression is a Bioinformatics & life sciences skill for AI agents, published by MDhewei in the bioinfor-claw repository on GitHub. Skillspace rates rnaseq-differential-expression C (77/100) and it passed the safety scan; the rating is based on static analysis only.
Perform RNA-seq differential expression analysis between two sample groups from a count matrix. Supports DESeq2-style (via pydeseq2), Welch's t-test, and Mann-Whitney U methods. Outputs full DE results, significant gene table, volcano plot, MA plot, and top-gene heatmap. Outputs feed directly into go-analysis-for-gene-list and gsea-for-ranked-gene-list.
- Grade
- C
- Quality
- 77 / 100
- Safety
- Passed
- GitHub stars
- 63
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 94 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- MIT
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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