sc-perturb-prep

sc-perturb-prep is a Bioinformatics & life sciences skill for AI agents, published by TianGzlab in the OmicsClaw repository on GitHub. Skillspace rates sc-perturb-prep A (90/100) and it passed the safety scan; the rating is based on static analysis only.

Load when attaching cell-barcode → sgRNA assignments from a mapping TSV/CSV onto a Perturb-seq expression AnnData, producing standardised perturbation / sgRNA / target-gene obs columns. Skip when the AnnData already has perturbation labels (go straight to sc-perturb) or for raw guide-calling from FASTQ (use upstream demuxlet / cellranger guide pipelines).

Grade
A
Quality
90 / 100
Safety
Passed
GitHub stars
152

Unproven: rated by static analysis only, not yet compared head-to-head.

This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.

View source on GitHubTianGzlab/OmicsClaw

Our review

Architecture
100 / 100
Maturity
Packaged: licensed, with a version or references
Security scan
Low-risk patterns
License
Apache-2.0
Adoption
Adopted by 0 other repositories, in 1 collections

What the scanner flagged

  • mentions secrets in text

Not checked yet

  • Not judged on the rubric yet (not a contender in its category)
  • No blind task eval yet
  • Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
  • Sibling files (scripts, references) not fetched; security scan covers SKILL.md only

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