scanpy
scanpy is a Bioinformatics & life sciences skill for AI agents, published by foryourhealth111-pixel in the Vibe-Skills repository on GitHub. Skillspace rates scanpy B (81/100) and it passed the safety scan; the rating is based on static analysis only.
Single-cell RNA-seq and retained scverse workflow owner. Load .h5ad/10X data, manage AnnData metadata, plan scVI/scANVI batch-correction workflows, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
- Grade
- B
- Quality
- 81 / 100
- Safety
- Passed
- GitHub stars
- 2,381
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 100 / 100
- Maturity
- Structured: ships references or scripts
- Security scan
- No issues found
- License
- Apache-2.0
- Adoption
- Adopted by 0 other repositories, in 1 collections
- Scope
- Vendor-specific: built around one product. Using the public Scanpy/scverse single-cell libraries
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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