spatial-transcriptomics-spatial-data-io
spatial-transcriptomics-spatial-data-io is a Bioinformatics & life sciences skill for AI agents, published by PharMolix in the OpenBioMed repository on GitHub. Skillspace rates spatial-transcriptomics-spatial-data-io D (63/100) and it passed the safety scan; the rating is based on static analysis only.
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.
- Grade
- D
- Quality
- 63 / 100
- Safety
- Passed
- GitHub stars
- 1,090
Unproven: rated by static analysis only, not yet compared head-to-head.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 80 / 100
- Maturity
- Basic: a single SKILL.md
- Security scan
- No issues found
- License
- MIT
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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