uniprot_database
uniprot_database is a Bioinformatics & life sciences skill for AI agents, published by ai4protein in the VenusFactory2 repository on GitHub. Skillspace rates uniprot_database C (73/100) and it passed the safety scan; the rating is based on static analysis only.
UniProt — protein sequence, function, taxonomy, cross-references. Search proteins by query, retrieve a UniProt entry, map IDs between databases (PDB↔UniProt etc.), pull FASTA sequence, fetch metadata, run SPARQL against sparql.uniprot.org. Use whenever the user mentions a UniProt accession (e.g. P04637), asks for protein function/sequence/family info, or needs cross-DB ID mapping. Don't use for AlphaFold structures (use alphafold_database) or PDB structures (use rcsb_database).
- Grade
- C
- Quality
- 73 / 100
- Safety
- Passed
- GitHub stars
- 242
Unproven: rated by static analysis only, not yet compared head-to-head.
Our two independent classifiers differ on this skill's category, so treat the placement as provisional.
This rating describes the version of the repository we crawled; it may have changed since, so go by its current files.
Our review
- Architecture
- 97 / 100
- Maturity
- Basic: a single SKILL.md
- Security scan
- No issues found
- License
- Not declared. Check the repository before reusing it.
- Adoption
- Adopted by 0 other repositories, in 0 collections
Not checked yet
- Not judged on the rubric yet (not a contender in its category)
- No blind task eval yet
- Scope (portable / vendor / repo-internal) not assessed; only the top of each category is read for scope
- Sibling files (scripts, references) not fetched; security scan covers SKILL.md only
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